PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.X5F2F
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family bHLH
Protein Properties Length: 362aa    MW: 41027.2 Da    PI: 4.821
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.X5F2FgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.41.5e-092843241055
                  HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  r+RR+riN ++  L+ l+P+      +K++ +++Le+Av+Y+k Lq
  Aradu.X5F2F 284 RKRRERINARLRILQGLVPNG-----TKVDISTMLEEAVNYVKFLQ 324
                  9******************97.....8******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.253274323IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.71E-13279338IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.6E-11280333IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.2E-10280329IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.91E-10283328No hitNo description
PfamPF000107.6E-7284324IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0016049Biological Processcell growth
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048766Biological Processroot hair initiation
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MEFLGAFPNN IELDCFKMFS NEKEHDFTYT TTTTSQLFLD QSSSLLGEDD ELNFGLVQST  60
LSSNFISDEN EHYLFHSLDA NPNTKMLHYK SQEESSYNSG GFSGGDTTFF NANMDLTTNY  120
YYSSNYHDDN VLANDVSISM ELLENYDHYQ CHQMEHVDVV PNNKQLELKR KIVEVPEFDV  180
SAENNTSNGS KNQKKKHFVA KDEQDCMKNE RCRKRKVVRN GNEGEERNNN VGLDGQSSSS  240
NINICEDDNA SEENNGGVTS VSHSNGKTRT IRGTAADPQS LYARKRRERI NARLRILQGL  300
VPNGTKVDIS TMLEEAVNYV KFLQLQIKLL SSDDLWMYAP LAYNGLDIGL KLNNLKNFSS  360
SP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1193215KKKHFVAKDEQDCMKNERCRKRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016207870.10.0PREDICTED: transcription factor bHLH84
TrEMBLA0A0B2RR601e-93A0A0B2RR60_GLYSO; Transcription factor bHLH84
TrEMBLK7MNL71e-93K7MNL7_SOYBN; Uncharacterized protein
STRINGGLYMA17G35423.13e-93(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80733121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.16e-52bHLH family protein